Biomodeling: PMF of DNA-DNA Interactions

References

1. Yoo, J. & Aksimentiev, A. Molecular Dynamics of Membrane-Spanning DNA Channels: Conductance Mechanism, Electro-Osmotic Transport, and Mechanical Gating. Journal of Physical Chemistry Letters 6, 4680-4687 (2015). https://doi.org/10.1021/acs.jpclett.5b01964

2. Yoo, J. & Aksimentiev, A. In situ structure and dynamics of DNA origami determined through molecular dynamics simulations. Proceedings of the National Academy of Sciences of the United States of America 110, 20099-20104 (2013). https://doi.org/10.1073/pnas.1316521110

Installation of Cadnano2

conda create -n cadnano2

conda activate cadnano2

conda install -c anaconda pip

pip install cadnano2

cadnano2